Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs11750565 chr5:1811318 T/G 5.72E-6 133 42.27 43.9 24.73 KM Plot
TGCT rs11775854 chr8:103072851 A/C 0.000112 134 42.18 32.18 48.45 KM Plot
TGCT rs11778285 chr8:103128351 C/G 1.55E-8 128 42.1 40.23 20.6 KM Plot
TGCT rs11778337 chr8:103128349 G/A 1.55E-8 128 42.1 40.23 20.6 KM Plot
TGCT rs11784583 chr8:103085037 G/T 0.00011 134 42.27 28.27 48.45 KM Plot
TGCT rs11787231 chr8:96457033 G/A 1.64E-5 134 45.1 35.37 19.23 KM Plot
TGCT rs117944677 chr7:128698185 A/T 1.87E-5 133 42.18 30.3 17.1 KM Plot
TGCT rs11801716 chr1:42143899 C/T 0 133 42.1 25.33 0.57 KM Plot
TGCT rs11816485 chr10:1147974 T/C 1.35E-13 134 42.03 66.9 17.1 KM Plot
TGCT rs11818314 chr10:1148157 G/C 1.35E-13 134 42.03 66.9 17.1 KM Plot
TGCT rs11819230 chr10:1128812 A/G 1.75E-13 133 42.03 70.63 17.1 KM Plot
TGCT rs11850235 chr14:78267944 T/C 7.3E-5 134 45.83 37.95 18.07 KM Plot
TGCT rs11873578 chr18:32792429 T/A 9.74E-5 132 17.1 27.1 50.97 KM Plot
TGCT rs11922084 chr3:125630876 C/G 2.17E-5 132 51.32 35.37 52.43 KM Plot
TGCT rs11961196 chr6:41344962 A/C 1.2E-6 130 45.1 25.77 11.53 KM Plot